#112352 Report by node labex2 covering 1892 tests from 49 modules resulted into 8 errors

Report

ObsPy version
1.2.2
Continuous Integration
-
GitHub Pull Request
-
Report file
XML document
Total runtime
253.4 sec
Report date/time
2020-11-10 04:49:12

System / Python

Architecture
64bit
Machine
x86_64
Node
labex2
Processor
x86_64
Python Compiler
GCC 7.3.0
Python Implementation
CPython
Python Version
3.7.3
Release
4.15.0-118-generic
System
Linux
Version
#119-Ubuntu SMP Tue Sep 8 12:30:01 UTC 2020

Dependencies

cartopy
---
decorator
4.4.2
flake8
---
future
0.18.2
geographiclib
---
lxml.etree
4.6.1
m2crypto
---
matplotlib
3.3.2
mock
4.0.2
mpl_toolkits.basemap
---
numpy
1.19.4
pep8-naming
---
pyflakes
---
pyimgur
---
pyproj
1.9.6
requests
2.24.0
scipy
1.5.2
setuptools
45.1.0.post20200119
shapefile
2.1.0
sqlalchemy
1.3.20

Modules (49)

Module Errors / Failures Tracebacks
obspy.clients.arclink Not tested -
obspy.clients.earthworm Not tested -
obspy.clients.fdsn Not tested -
obspy.clients.filesystem - -
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl Not tested -
obspy.clients.seedlink Not tested -
obspy.clients.seishub Not tested -
obspy.clients.syngine Not tested -
obspy.core 6 1 2 3 4 5 6
obspy.db - -
obspy.geodetics - -
obspy.imaging 1 7
obspy.io.ah - -
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf - -
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc 1 8
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal - -
obspy.taup - -
Summary 8 8

Tracebacks (8)

Traceback (most recent call last):
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/tests/test_network.py", line 386, in test_location_plot_local
size=13**2, outfile=ic.name)
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/inventory/network.py", line 609, in plot
from obspy.imaging.maps import plot_map
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/imaging/maps.py", line 33, in <module>
from mpl_toolkits.basemap import Basemap
File "/home/damian/miniconda3/lib/python3.7/site-packages/mpl_toolkits/basemap/__init__.py", line 50, in <module>
from .proj import Proj
File "/home/damian/miniconda3/lib/python3.7/site-packages/mpl_toolkits/basemap/proj.py", line 6, in <module>
from matplotlib.cbook import dedent
ImportError: cannot import name 'dedent' from 'matplotlib.cbook' (/home/damian/miniconda3/lib/python3.7/site-packages/matplotlib/cbook/__init__.py)
Traceback (most recent call last):
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/tests/test_network.py", line 367, in test_location_plot_ortho
color='yellow', label=False, outfile=ic.name)
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/inventory/network.py", line 609, in plot
from obspy.imaging.maps import plot_map
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/imaging/maps.py", line 33, in <module>
from mpl_toolkits.basemap import Basemap
File "/home/damian/miniconda3/lib/python3.7/site-packages/mpl_toolkits/basemap/__init__.py", line 50, in <module>
from .proj import Proj
File "/home/damian/miniconda3/lib/python3.7/site-packages/mpl_toolkits/basemap/proj.py", line 6, in <module>
from matplotlib.cbook import dedent
ImportError: cannot import name 'dedent' from 'matplotlib.cbook' (/home/damian/miniconda3/lib/python3.7/site-packages/matplotlib/cbook/__init__.py)
Traceback (most recent call last):
File "/home/damian/miniconda3/lib/python3.7/doctest.py", line 2196, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for obspy.core.utcdatetime.UTCDateTime.matplotlib_date
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/utcdatetime.py", line unknown line number, in matplotlib_date
----------------------------------------------------------------------
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/utcdatetime.py", line ?, in obspy.core.utcdatetime.UTCDateTime.matplotlib_date
Failed example:
t.matplotlib_date
Expected:
733643.0139780092
Got:
14480.01397800926
Traceback (most recent call last):
File "/home/damian/miniconda3/lib/python3.7/doctest.py", line 2196, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for obspy.core.trace.Trace.times
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/trace.py", line 2487, in times
----------------------------------------------------------------------
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/trace.py", line 2529, in obspy.core.trace.Trace.times
Failed example:
tr.times("matplotlib")
Expected:
array([ 733643.01392361, 733643.01392373, 733643.01392384, ...,
733643.01427049, 733643.0142706 , 733643.01427072])
Got:
array([ 14480.01392361, 14480.01392373, 14480.01392384, ...,
14480.01427049, 14480.0142706 , 14480.01427072])
Traceback (most recent call last):
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/tests/test_trace.py", line 1448, in test_times
np.testing.assert_allclose(got[:5], expected, rtol=1e-17)
File "/home/damian/miniconda3/lib/python3.7/site-packages/numpy/testing/_private/utils.py", line 1528, in assert_allclose
verbose=verbose, header=header, equal_nan=equal_nan)
File "/home/damian/miniconda3/lib/python3.7/site-packages/numpy/testing/_private/utils.py", line 840, in assert_array_compare
raise AssertionError(msg)
AssertionError:
Not equal to tolerance rtol=1e-17, atol=0
Mismatched elements: 5 / 5 (100%)
Max absolute difference: 719163.0
Max relative difference: 0.9849928778830878
x: array([ 10957. , 10957.000001, 10957.000001, 10957.000002,
10957.000002])
y: array([ 730120. , 730120.000001, 730120.000001, 730120.000002,
730120.000002])
Traceback (most recent call last):
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/tests/test_utcdatetime.py", line 1093, in test_matplotlib_date
t.matplotlib_date, expected, decimal=8)
File "/home/damian/miniconda3/lib/python3.7/site-packages/numpy/testing/_private/utils.py", line 595, in assert_almost_equal
raise AssertionError(_build_err_msg())
AssertionError:
Arrays are not almost equal to 8 decimals
ACTUAL: 5965.5723676839116
DESIRED: 725128.5723676839
>>> Cannot import test suite for module obspy.imaging due to:
-------------------------------------------------------------
File "/home/damian/miniconda3/bin/obspy-runtests", line 10, in <module>
sys.exit(main())
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/scripts/runtests.py", line 747, in main
errors = run(argv, interactive)
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/scripts/runtests.py", line 715, in run
pr_url=args.pr_url)
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/scripts/runtests.py", line 542, in run_tests
suites, status, import_failures = _get_suites(verbosity, tests)
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/scripts/runtests.py", line 164, in _get_suites
suite.append(ut.loadTestsFromName(test, None))
File "/home/damian/miniconda3/lib/python3.7/unittest/loader.py", line 205, in loadTestsFromName
test = obj()
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/imaging/tests/__init__.py", line 23, in suite
add_doctests(suite, MODULE_NAME)
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/core/util/testing.py", line 120, in add_doctests
fromlist=[native_str("obspy")])
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/imaging/maps.py", line 33, in <module>
from mpl_toolkits.basemap import Basemap
File "/home/damian/miniconda3/lib/python3.7/site-packages/mpl_toolkits/basemap/__init__.py", line 50, in <module>
from .proj import Proj
File "/home/damian/miniconda3/lib/python3.7/site-packages/mpl_toolkits/basemap/proj.py", line 6, in <module>
from matplotlib.cbook import dedent
ImportError: cannot import name 'dedent' from 'matplotlib.cbook' (/home/damian/miniconda3/lib/python3.7/site-packages/matplotlib/cbook/__init__.py)
Traceback (most recent call last):
File "/home/damian/miniconda3/lib/python3.7/site-packages/obspy/io/nlloc/tests/test_util.py", line 60, in test_read_nlloc_scatter_coordinate_conversion
np.testing.assert_allclose(got[field], expected[field], rtol=1e-5)
File "/home/damian/miniconda3/lib/python3.7/site-packages/numpy/testing/_private/utils.py", line 1528, in assert_allclose
verbose=verbose, header=header, equal_nan=equal_nan)
File "/home/damian/miniconda3/lib/python3.7/site-packages/numpy/testing/_private/utils.py", line 840, in assert_array_compare
raise AssertionError(msg)
AssertionError:
Not equal to tolerance rtol=1e-05, atol=0
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 0.00140380859375
Max relative difference: 0.00012006328324787319
x: array([ 11.693643, 11.692802, 11.693143, 11.69564 , 11.692195,
11.693854, 11.683114, 11.691299, 11.696191, 11.68159 ,
11.69365 , 11.687802], dtype=float32)
y: array([ 11.692239, 11.6914 , 11.69174 , 11.694236, 11.690792,
11.692451, 11.681713, 11.689898, 11.694788, 11.680189,
11.692247, 11.6864 ], dtype=float32)

Skipped tests (34)

Submodule Test Skip message
core test_combined_station_event_plot (obspy.core.tests.test_inventory.InventoryBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_location_plot_global (obspy.core.tests.test_inventory.InventoryBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_location_plot_local (obspy.core.tests.test_inventory.InventoryBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_location_plot_ortho (obspy.core.tests.test_inventory.InventoryBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_location_plot_global (obspy.core.tests.test_inventory.InventoryCartopyTestCase) cartopy not installed
core test_location_plot_local (obspy.core.tests.test_inventory.InventoryCartopyTestCase) cartopy not installed
core test_location_plot_ortho (obspy.core.tests.test_inventory.InventoryCartopyTestCase) cartopy not installed
core test_catalog_plot_global (obspy.core.tests.test_event.CatalogBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_catalog_plot_local (obspy.core.tests.test_event.CatalogBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_catalog_plot_ortho (obspy.core.tests.test_event.CatalogBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_catalog_plot_ortho_longitude_wrap (obspy.core.tests.test_event.CatalogBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_plot_catalog_before_1900 (obspy.core.tests.test_event.CatalogBasemapTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_catalog_plot_global (obspy.core.tests.test_event.CatalogCartopyTestCase) Cartopy not installed or too old
core test_catalog_plot_local (obspy.core.tests.test_event.CatalogCartopyTestCase) Cartopy not installed or too old
core test_catalog_plot_ortho (obspy.core.tests.test_event.CatalogCartopyTestCase) Cartopy not installed or too old
core test_catalog_plot_ortho_longitude_wrap (obspy.core.tests.test_event.CatalogCartopyTestCase) Cartopy not installed or too old
core test_plot_farfield_without_quiver_with_maps (obspy.core.tests.test_event.EventTestCase) matplotlib 3.0.1 is not compatible with basemap
core test_location_plot_global (obspy.core.tests.test_network.NetworkBasemapTestCase) unsupported proj4 library
core test_location_plot_global (obspy.core.tests.test_network.NetworkCartopyTestCase) cartopy not installed
core test_location_plot_local (obspy.core.tests.test_network.NetworkCartopyTestCase) cartopy not installed
core test_location_plot_ortho (obspy.core.tests.test_network.NetworkCartopyTestCase) cartopy not installed
core test_flake8 (obspy.core.tests.test_code_formatting.CodeFormattingTestCase) No code formatting tests for release builds
core test_use_obspy_deprecation_warning (obspy.core.tests.test_code_formatting.CodeFormattingTestCase) No code formatting tests for release builds
core test_future_imports_in_every_file (obspy.core.tests.test_code_formatting.FutureUsageTestCase) No code formatting tests for release builds
core test_no_pyplot_import_in_any_file (obspy.core.tests.test_code_formatting.MatplotlibBackendUsageTestCase) No code formatting tests for release builds
geodetics test_gps_2_dist_azimuth_with_geographiclib (obspy.geodetics.tests.test_util_geodetics.UtilGeodeticsTestCase) Module geographiclib is not installed
geodetics test_issue_375 (obspy.geodetics.tests.test_util_geodetics.UtilGeodeticsTestCase) Module geographiclib is not installed
signal test_ppsd_spectrogram_plot (obspy.signal.tests.test_spectral_estimation.PsdTestCase) matplotlib >= 3 shifts labels
taup test_path_geo (obspy.taup.tests.test_taup_geo.TaupGeoTestCase) Module geographiclib is not installed or too old.
taup test_path_resampling (obspy.taup.tests.test_taup_geo.TaupGeoTestCase) Module geographiclib is not installed or too old.
taup test_compute_ray_paths (obspy.taup.tests.test_ray_paths.RayPathCalculationsTestCase) test needs geographiclib >= 1.34
taup test_p_iasp91_geo_manual (obspy.taup.tests.test_tau.TauPyModelTestCase) Module geographiclib is not installed
taup test_pierce_p_iasp91_geo (obspy.taup.tests.test_tau.TauPyModelTestCase) test needs geographiclib >= 1.34
taup test_single_path_geo_iasp91 (obspy.taup.tests.test_tau.TauPyModelTestCase) test needs geographiclib >= 1.34

Slowest tests (20)

Runtime Test
13.318s __init__ (obspy.taup)
10.111s test_shoot_existing_ray_param (obspy.taup.tests.test_seismic_phase.TauPySeismicPhaseTestCase)
9.754s test_relcal_different_overlaps (obspy.signal.tests.test_calibration.CalibrationTestCase)
9.364s test_response_calculation_from_seed_and_xseed (obspy.io.xseed.tests.test_core.CoreTestCase)
6.599s test_trim_floating_point_with_padding_2 (obspy.core.tests.test_trace.TraceTestCase)
6.309s test_ppsd_restricted_stacks (obspy.signal.tests.test_spectral_estimation.PsdTestCase)
6.139s plot_travel_times (obspy.taup.tau)
5.827s test_regional_models (obspy.taup.tests.test_tau.TauPyModelTestCase)
5.729s test_polarization_vidale (obspy.signal.tests.test_polarization.PolarizationTestCase)
5.371s test_vs_java_iasp91 (obspy.taup.tests.test_tau.TauPyModelTestCase)
4.638s test_remove_response_plot (obspy.core.tests.test_trace.TraceTestCase)
4.444s test_many_identically_named_phases (obspy.taup.tests.test_seismic_phase.TauPySeismicPhaseTestCase)
3.501s test_correlate_stream_template_and_correlation_detector (obspy.signal.tests.test_cross_correlation.CrossCorrelationTestCase)
3.266s test_rotate2zne_against_lqt_different_combinations (obspy.signal.tests.test_rotate.RotateTestCase)
3.191s test_plot_tf_misfits (obspy.signal.tests.test_tf_misfit.TfPlotTestCase)
2.978s test_plot_tf_gofs (obspy.signal.tests.test_tf_misfit.TfPlotTestCase)
2.749s test_relcal_using_dict (obspy.signal.tests.test_calibration.CalibrationTestCase)
2.748s test_relcal_using_traces (obspy.signal.tests.test_calibration.CalibrationTestCase)
2.687s test_auto_read_arclink_xml (obspy.io.arclink.tests.test_inventory_xml.ArclinkInventoryTestCase)
2.629s test_evalresp_file_like_object (obspy.signal.tests.test_invsim.InvSimTestCase)

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