#114162 Report by node lamb covering 1968 tests from 49 modules resulted into 10 errors

Report

ObsPy version
1.2.2
Continuous Integration
-
GitHub Pull Request
-
Report file
XML document
Total runtime
220.9 sec
Report date/time
2021-06-14 21:35:35

System / Python

Architecture
64bit
Machine
x86_64
Node
lamb
Processor
x86_64
Python Compiler
GCC 7.3.0
Python Implementation
CPython
Python Version
3.7.10
Release
2.6.32-642.6.1.el6.x86_64
System
Linux
Version
#1 SMP Wed Oct 5 00:36:12 UTC 2016

Dependencies

cartopy
---
decorator
5.0.9
flake8
---
future
0.18.2
geographiclib
---
lxml.etree
4.6.3
m2crypto
---
matplotlib
2.2.4
mock
---
mpl_toolkits.basemap
---
numpy
1.19.4
pep8-naming
---
pyflakes
---
pyimgur
---
pyproj
---
requests
2.25.1
scipy
1.5.3
setuptools
52.0.0.post20210125
shapefile
---
sqlalchemy
1.3.5

Modules (49)

Module Errors / Failures Tracebacks
obspy.clients.arclink Not tested -
obspy.clients.earthworm Not tested -
obspy.clients.fdsn Not tested -
obspy.clients.filesystem 10 1 2 3 4 5 6 7 8 9 10
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl Not tested -
obspy.clients.seedlink Not tested -
obspy.clients.seishub Not tested -
obspy.clients.syngine Not tested -
obspy.core - -
obspy.db - -
obspy.geodetics - -
obspy.imaging - -
obspy.io.ah - -
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf - -
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc - -
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal - -
obspy.taup - -
Summary 10 10

Tracebacks (10)

Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1501, in _fetch_index_rows
summary_present = self.has_tsindex_summary()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 393, in test_get_availability
"2018-12-31")
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 442, in get_availability
starttime, endtime)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 704, in _get_tsindex_rows
return self.request_handler._fetch_index_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1600, in _fetch_index_rows
raise ValueError(str(err))
ValueError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 248, in test_get_availability_extent
"2018-12-31T00:00:00.000000")
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 385, in get_availability_extent
starttime, endtime)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 622, in _get_summary_rows
return self.request_handler._fetch_summary_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1654, in _fetch_summary_rows
tsindex_summary_cte = self.get_tsindex_summary_cte()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1327, in get_tsindex_summary_cte
if self.has_tsindex_summary():
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 186, in test_get_nslc
"2018-01-01T00:00:00.019499")
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 343, in get_nslc
channel, starttime, endtime)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 622, in _get_summary_rows
return self.request_handler._fetch_summary_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1654, in _fetch_summary_rows
tsindex_summary_cte = self.get_tsindex_summary_cte()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1327, in get_tsindex_summary_cte
if self.has_tsindex_summary():
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1501, in _fetch_index_rows
summary_present = self.has_tsindex_summary()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 71, in test_get_waveforms
endtime=UTCDateTime(2018, 1, 1, 0, 0, 5))
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 287, in get_waveforms
return self._get_waveforms(query_rows, merge)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 648, in _get_waveforms
index_rows = self.request_handler._fetch_index_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1600, in _fetch_index_rows
raise ValueError(str(err))
ValueError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1501, in _fetch_index_rows
summary_present = self.has_tsindex_summary()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 148, in test_get_waveforms_bulk
returned_stream = client.get_waveforms_bulk(bulk_request)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 313, in get_waveforms_bulk
return self._get_waveforms(query_rows, merge)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 648, in _get_waveforms
index_rows = self.request_handler._fetch_index_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1600, in _fetch_index_rows
raise ValueError(str(err))
ValueError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1501, in _fetch_index_rows
summary_present = self.has_tsindex_summary()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 587, in test_has_data
self.assertTrue(client.has_data())
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 588, in has_data
endtime)[0]
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 522, in get_availability_percentage
merge_overlap=True)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 442, in get_availability
starttime, endtime)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 704, in _get_tsindex_rows
return self.request_handler._fetch_index_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1600, in _fetch_index_rows
raise ValueError(str(err))
ValueError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 792, in test_build_file_list
relative_paths=False)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/unittest/case.py", line 1298, in assertRaisesRegex
return context.handle('assertRaisesRegex', args, kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/unittest/case.py", line 178, in handle
callable_obj(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1084, in build_file_list
if reindex is False and self.request_handler.has_tsindex():
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1435, in has_tsindex
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 943, in test__fetch_summary_rows
[("I*,CU",
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1654, in _fetch_summary_rows
tsindex_summary_cte = self.get_tsindex_summary_cte()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1327, in get_tsindex_summary_cte
if self.has_tsindex_summary():
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tests/test_tsindex.py", line 976, in test_get_tsindex_summary_cte
ts_summary_cte = request_handler.get_tsindex_summary_cte()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1327, in get_tsindex_summary_cte
if self.has_tsindex_summary():
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/doctest.py", line 2204, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for obspy.clients.filesystem.tsindex
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1, in tsindex
----------------------------------------------------------------------
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 64, in obspy.clients.filesystem.tsindex
Failed example:
extents = client.get_availability_extent(network="IU", channel="BHZ")
Exception raised:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.clients.filesystem.tsindex[6]>", line 1, in <module>
extents = client.get_availability_extent(network="IU", channel="BHZ")
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 385, in get_availability_extent
starttime, endtime)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 622, in _get_summary_rows
return self.request_handler._fetch_summary_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1654, in _fetch_summary_rows
tsindex_summary_cte = self.get_tsindex_summary_cte()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1327, in get_tsindex_summary_cte
if self.has_tsindex_summary():
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
----------------------------------------------------------------------
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 65, in obspy.clients.filesystem.tsindex
Failed example:
for extent in extents:
print("{0:<3} {1:<6} {2:<3} {3:<4} {4} {5}".format(*extent))
Exception raised:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.clients.filesystem.tsindex[7]>", line 1, in <module>
for extent in extents:
NameError: name 'extents' is not defined
----------------------------------------------------------------------
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 81, in obspy.clients.filesystem.tsindex
Failed example:
avail_percentage = client.get_availability_percentage(
"IU", "ANMO", "10", "BHZ",
UTCDateTime(2018, 1, 1, 0, 0, 0, 19500),
UTCDateTime(2018, 1, 1, 0, 1, 57, 994536))
Exception raised:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1501, in _fetch_index_rows
summary_present = self.has_tsindex_summary()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.clients.filesystem.tsindex[9]>", line 4, in <module>
UTCDateTime(2018, 1, 1, 0, 1, 57, 994536))
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 522, in get_availability_percentage
merge_overlap=True)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 442, in get_availability
starttime, endtime)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 704, in _get_tsindex_rows
return self.request_handler._fetch_index_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1600, in _fetch_index_rows
raise ValueError(str(err))
ValueError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
----------------------------------------------------------------------
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 85, in obspy.clients.filesystem.tsindex
Failed example:
print(avail_percentage)
Exception raised:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.clients.filesystem.tsindex[10]>", line 1, in <module>
print(avail_percentage)
NameError: name 'avail_percentage' is not defined
----------------------------------------------------------------------
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 99, in obspy.clients.filesystem.tsindex
Failed example:
st = client.get_waveforms("IU", "*", "*", "BHZ", t, t + 1)
Exception raised:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: disk I/O error
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1501, in _fetch_index_rows
summary_present = self.has_tsindex_summary()
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1419, in has_tsindex_summary
table_names = sa.inspect(self.engine).get_table_names()
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/deprecations.py", line 130, in warned
return fn(*args, **kwargs)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 203, in get_table_names
self.bind, schema, info_cache=self.info_cache
File "<string>", line 2, in get_table_names
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/reflection.py", line 56, in cache
ret = fn(self, con, *args, **kw)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1536, in get_table_names
rs = connection.execute(s)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 2166, in execute
return connection.execute(statement, *multiparams, **params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return self._execute_text(object_, multiparams, params)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1155, in _execute_text
parameters,
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1248, in _execute_context
e, statement, parameters, cursor, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1466, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 399, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/util/compat.py", line 153, in reraise
raise value.with_traceback(tb)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/base.py", line 1244, in _execute_context
cursor, statement, parameters, context
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/sqlalchemy/engine/default.py", line 550, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.clients.filesystem.tsindex[12]>", line 1, in <module>
st = client.get_waveforms("IU", "*", "*", "BHZ", t, t + 1)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 287, in get_waveforms
return self._get_waveforms(query_rows, merge)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 648, in _get_waveforms
index_rows = self.request_handler._fetch_index_rows(query_rows)
File "/home/azua/anaconda3/envs/obspyDMT/lib/python3.7/site-packages/obspy/clients/filesystem/tsindex.py", line 1600, in _fetch_index_rows
raise ValueError(str(err))
ValueError: (sqlite3.OperationalError) disk I/O error
[SQL: SELECT name FROM sqlite_master WHERE type='table' ORDER BY name]
(Background on this error at: http://sqlalche.me/e/e3q8)

Skipped tests (44)

Submodule Test Skip message
core test_combined_station_event_plot (obspy.core.tests.test_inventory.InventoryBasemapTestCase) basemap not installed
core test_location_plot_global (obspy.core.tests.test_inventory.InventoryBasemapTestCase) basemap not installed
core test_location_plot_local (obspy.core.tests.test_inventory.InventoryBasemapTestCase) basemap not installed
core test_location_plot_ortho (obspy.core.tests.test_inventory.InventoryBasemapTestCase) basemap not installed
core test_location_plot_global (obspy.core.tests.test_inventory.InventoryCartopyTestCase) cartopy not installed
core test_location_plot_local (obspy.core.tests.test_inventory.InventoryCartopyTestCase) cartopy not installed
core test_location_plot_ortho (obspy.core.tests.test_inventory.InventoryCartopyTestCase) cartopy not installed
core test_catalog_plot_global (obspy.core.tests.test_event.CatalogBasemapTestCase) basemap not installed
core test_catalog_plot_local (obspy.core.tests.test_event.CatalogBasemapTestCase) basemap not installed
core test_catalog_plot_ortho (obspy.core.tests.test_event.CatalogBasemapTestCase) basemap not installed
core test_catalog_plot_ortho_longitude_wrap (obspy.core.tests.test_event.CatalogBasemapTestCase) basemap not installed
core test_plot_catalog_before_1900 (obspy.core.tests.test_event.CatalogBasemapTestCase) basemap not installed
core test_catalog_plot_global (obspy.core.tests.test_event.CatalogCartopyTestCase) Cartopy not installed or too old
core test_catalog_plot_local (obspy.core.tests.test_event.CatalogCartopyTestCase) Cartopy not installed or too old
core test_catalog_plot_ortho (obspy.core.tests.test_event.CatalogCartopyTestCase) Cartopy not installed or too old
core test_catalog_plot_ortho_longitude_wrap (obspy.core.tests.test_event.CatalogCartopyTestCase) Cartopy not installed or too old
core test_plot_farfield_without_quiver_with_maps (obspy.core.tests.test_event.EventTestCase) basemap not installed
core test_location_plot_global (obspy.core.tests.test_network.NetworkBasemapTestCase) basemap not installed
core test_location_plot_local (obspy.core.tests.test_network.NetworkBasemapTestCase) basemap not installed
core test_location_plot_ortho (obspy.core.tests.test_network.NetworkBasemapTestCase) basemap not installed
core test_location_plot_global (obspy.core.tests.test_network.NetworkCartopyTestCase) cartopy not installed
core test_location_plot_local (obspy.core.tests.test_network.NetworkCartopyTestCase) cartopy not installed
core test_location_plot_ortho (obspy.core.tests.test_network.NetworkCartopyTestCase) cartopy not installed
core test_flake8 (obspy.core.tests.test_code_formatting.CodeFormattingTestCase) No code formatting tests for release builds
core test_use_obspy_deprecation_warning (obspy.core.tests.test_code_formatting.CodeFormattingTestCase) No code formatting tests for release builds
core test_future_imports_in_every_file (obspy.core.tests.test_code_formatting.FutureUsageTestCase) No code formatting tests for release builds
core test_no_pyplot_import_in_any_file (obspy.core.tests.test_code_formatting.MatplotlibBackendUsageTestCase) No code formatting tests for release builds
geodetics test_gps_2_dist_azimuth_with_geographiclib (obspy.geodetics.tests.test_util_geodetics.UtilGeodeticsTestCase) Module geographiclib is not installed
geodetics test_issue_375 (obspy.geodetics.tests.test_util_geodetics.UtilGeodeticsTestCase) Module geographiclib is not installed
imaging test_script_plot (obspy.imaging.tests.test_mopad_script.MopadTestCase) Currently broken until further review.
io.nlloc test_read_nlloc_scatter_coordinate_conversion (obspy.io.nlloc.tests.test_util.NLLOCTestCase) pyproj not installed
io.shapefile test_write_catalog_shapefile (obspy.io.shapefile.tests.test_core.ShapefileTestCase) pyshp not installed
io.shapefile test_write_catalog_shapefile_via_plugin (obspy.io.shapefile.tests.test_core.ShapefileTestCase) pyshp not installed
io.shapefile test_write_catalog_shapefile_with_extra_field (obspy.io.shapefile.tests.test_core.ShapefileTestCase) pyshp not installed
io.shapefile test_write_inventory_shapefile (obspy.io.shapefile.tests.test_core.ShapefileTestCase) pyshp not installed
io.shapefile test_write_inventory_shapefile_via_plugin (obspy.io.shapefile.tests.test_core.ShapefileTestCase) pyshp not installed
io.shapefile test_write_inventory_shapefile_with_extra_field (obspy.io.shapefile.tests.test_core.ShapefileTestCase) pyshp not installed
signal test_schema_validation (obspy.signal.tests.test_quality_control.QualityControlTestCase) Test requires the jsonschema module
taup test_p_iasp91_geo_manual (obspy.taup.tests.test_tau.TauPyModelTestCase) Module geographiclib is not installed
taup test_pierce_p_iasp91_geo (obspy.taup.tests.test_tau.TauPyModelTestCase) test needs geographiclib >= 1.34
taup test_single_path_geo_iasp91 (obspy.taup.tests.test_tau.TauPyModelTestCase) test needs geographiclib >= 1.34
taup test_path_geo (obspy.taup.tests.test_taup_geo.TaupGeoTestCase) Module geographiclib is not installed or too old.
taup test_path_resampling (obspy.taup.tests.test_taup_geo.TaupGeoTestCase) Module geographiclib is not installed or too old.
taup test_compute_ray_paths (obspy.taup.tests.test_ray_paths.RayPathCalculationsTestCase) test needs geographiclib >= 1.34

Slowest tests (20)

Runtime Test
8.877s __init__ (obspy.taup)
6.956s test_response_calculation_from_seed_and_xseed (obspy.io.xseed.tests.test_core.CoreTestCase)
6.722s test_shoot_existing_ray_param (obspy.taup.tests.test_seismic_phase.TauPySeismicPhaseTestCase)
6.120s test_relcal_different_overlaps (obspy.signal.tests.test_calibration.CalibrationTestCase)
5.093s test_is_format (obspy.core.tests.test_waveform_plugins.WaveformPluginsTestCase)
4.631s test_ppsd_restricted_stacks (obspy.signal.tests.test_spectral_estimation.PsdTestCase)
4.213s plot_travel_times (obspy.taup.tau)
4.019s test_polarization_vidale (obspy.signal.tests.test_polarization.PolarizationTestCase)
3.870s test_regional_models (obspy.taup.tests.test_tau.TauPyModelTestCase)
3.869s test_plot_multiple_traces (obspy.imaging.tests.test_waveform.WaveformTestCase)
3.520s test_vs_java_iasp91 (obspy.taup.tests.test_tau.TauPyModelTestCase)
3.310s read (obspy.core.stream)
3.024s test_many_identically_named_phases (obspy.taup.tests.test_seismic_phase.TauPySeismicPhaseTestCase)
2.848s test_remove_response_plot (obspy.core.tests.test_trace.TraceTestCase)
2.334s test_evalresp_file_like_object (obspy.signal.tests.test_invsim.InvSimTestCase)
2.191s test_correlate_stream_template_and_correlation_detector (obspy.signal.tests.test_cross_correlation.CrossCorrelationTestCase)
2.156s test_rotate2zne_against_lqt_different_combinations (obspy.signal.tests.test_rotate.RotateTestCase)
1.924s test_auto_read_arclink_xml (obspy.io.arclink.tests.test_inventory_xml.ArclinkInventoryTestCase)
1.866s test_relcal_using_traces (obspy.signal.tests.test_calibration.CalibrationTestCase)
1.855s test_relcal_using_dict (obspy.signal.tests.test_calibration.CalibrationTestCase)

Chuck Norris fact

Every SQL statement that Chuck Norris codes has an implicit "COMMIT" in its end.