#119622 Report by node gh-actions covering 2006 tests from 62 modules resulted into no errors

Report

ObsPy version
1.2.2.post0+566.g3c2e932233.o…
GitHub Pull Request
-
Report file
JSON document
Total runtime
244.3 sec
Report date/time
Feb. 22, 2022, 8:56 a.m.

System / Python

Architecture
64bit
Machine
x86_64
Node
gh-actions
Processor
i386
Python Compiler
Clang 13.0.0 (clang-1300.0.29.3)
Python Implementation
CPython
Python Version
3.10.1
Release
20.6.0
System
Darwin
Version
Darwin Kernel Version 20.6.0: Wed Jan 12 22:22:42 PST 2022; root:xnu-7195.141.19~2/RELEASE_X86_64

Dependencies

cartopy
---
decorator
5.1.1
flake8
---
geographiclib
---
lxml
4.8.0
matplotlib
3.5.1
numpy
1.22.2
obspy
1.2.2.post0+566.g3c2e932233.obspy.build.wheels
pyproj
3.3.0
pytest
7.0.1
pytest-json-report
1.4.1
requests
2.27.1
scipy
1.8.0
setuptools
58.3.0
shapefile
---
sqlalchemy
1.4.31

Modules (62)

Module Errors / Failures Tracebacks
obspy.clients Not tested -
obspy.clients.arclink Not tested -
obspy.clients.earthworm Not tested -
obspy.clients.fdsn - -
obspy.clients.filesystem - -
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl Not tested -
obspy.clients.seedlink Not tested -
obspy.clients.seishub Not tested -
obspy.clients.syngine Not tested -
obspy.core - -
obspy.core.event - -
obspy.core.inventory - -
obspy.core.util - -
obspy.db Not tested -
obspy.geodetics - -
obspy.imaging - -
obspy.io.ah - -
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf - -
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc - -
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal - -
obspy.taup - -
Summary - -

Skipped tests (41)

Submodule Test Skip message
core core/stream.py::obspy.core.stream._is_pickle Skipped: all tests skipped by +SKIP option
core core/tests/test_event.py::TestEvent::test_plot_farfield_without_quiver_with_maps Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_global Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_ortho Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_local Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_combined_station_event_plot Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_global Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_ortho Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_local Skipped: cartopy not installed
core.util core/util/misc.py::obspy.core.util.misc.CatchOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.SuppressOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.TemporaryWorkingDirectory Skipped: all tests skipped by +SKIP option
geodetics geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_gps_2_dist_azimuth_with_geographiclib Skipped: Module geographiclib is not installed
geodetics geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_issue_375 Skipped: Module geographiclib is not installed
imaging imaging/tests/test_mopad_script.py::TestMopad::test_script_plot Skipped: Currently broken until further review.
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_slist Skipped: all tests skipped by +SKIP option
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_tspair Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._evmagtonor Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._nortoevmag Skipped: all tests skipped by +SKIP option
io.pde io/pde/mchedr.py::obspy.io.pde.mchedr._is_mchedr Skipped: all tests skipped by +SKIP option
io.quakeml io/quakeml/core.py::obspy.io.quakeml.core._is_quakeml Skipped: all tests skipped by +SKIP option
io.seisan io/seisan/core.py::obspy.io.seisan.core._is_seisan Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_asc Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_q Skipped: all tests skipped by +SKIP option
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_with_extra_field Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_with_extra_field Skipped: pyshp not installed
io.wav io/wav/core.py::obspy.io.wav.core._is_wav Skipped: all tests skipped by +SKIP option
io.y io/y/core.py::obspy.io.y.core._is_y Skipped: all tests skipped by +SKIP option
signal signal/quality_control.py::obspy.signal.quality_control.MSEEDMetadata Skipped: all tests skipped by +SKIP option
signal signal/tests/test_quality_control.py::QualityControlTestCase::test_schema_validation Skipped: Test requires the jsonschema module
signal signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_spectrogram_plot Skipped: matplotlib >= 3 shifts labels
taup taup/tests/test_ray_paths.py::TestRayPathCalculations::test_compute_ray_paths Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_tau.py::TestTauPyModel::test_p_iasp91_geo_manual Skipped: Module geographiclib is not installed
taup taup/tests/test_tau.py::TestTauPyModel::test_pierce_p_iasp91_geo Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_tau.py::TestTauPyModel::test_single_path_geo_iasp91 Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_taup_geo.py::TestTaupGeo::test_path_geo Skipped: Module geographiclib is not installed or too old.
taup taup/tests/test_taup_geo.py::TestTaupGeo::test_path_resampling Skipped: Module geographiclib is not installed or too old.

Slowest tests (20)

Runtime Test
10.784s taup/__init__.py::obspy.taup
8.618s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_shoot_existing_ray_param
6.301s io/xseed/tests/test_core.py::CoreTestCase::test_response_calculation_from_seed_and_xseed
4.998s taup/tau.py::obspy.taup.tau.plot_travel_times
4.783s taup/tests/test_tau.py::TestTauPyModel::test_regional_models
4.394s signal/tests/test_calibration.py::CalibrationTestCase::test_relcal_different_overlaps
4.217s taup/tests/test_tau.py::TestTauPyModel::test_vs_java_iasp91
3.389s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_many_identically_named_phases
3.345s signal/tests/test_polarization.py::PolarizationTestCase::test_polarization_vidale
2.919s signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_restricted_stacks
2.702s signal/tests/test_rotate.py::RotateTestCase::test_rotate2zne_against_lqt_different_combinations
2.406s signal/tests/test_cross_correlation.py::TestCrossCorrelation::test_correlate_stream_template_and_correlation_detector
2.252s io/arclink/tests/test_inventory_xml.py::ArclinkInventoryTestCase::test_auto_read_arclink_xml
2.127s core/tests/test_trace.py::TestTrace::test_remove_response_plot
2.011s core/stream.py::obspy.core.stream.read
1.848s taup/tests/test_taup_plotting.py::TestTauPyPlotting::test_spherical_many_phases
1.828s signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_w_iris_against_obspy_results
1.790s taup/tau.py::obspy.taup.tau.TauPyModel.__init__
1.785s signal/tests/test_tf_misfit.py::TestTfPlot::test_plot_tf_misfits
1.614s io/mseed/tests/test_mseed_special_issues.py::MSEEDSpecialIssueTestCase::test_infinite_loop

Warnings (33)

Stage Filename Category Message
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/core/utcdatetime.py:1084 ObsPyDeprecationWarning Comparing UTCDateTime objects of different precision is not defined will raise an Exception in a future version of obspy
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/io/seiscomp/inventory.py:496 UserWarning Clock drift division by sample rate of 0: using sec/sample
collect /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/clients/arclink/__init__.py:34 ObsPyDeprecationWarning ArcLink protocol has been officially deprecated and some main servers have been shut down already. Please consider using other methods like FDSN web services to fetch data. ArcLink functionality is now untested in ObsPy.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/io/mseed/core.py:710 UserWarning Detected non contiguous data array in Stream[0].data. Trying to fix array.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/taup/tau.py:340 RuntimeWarning More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/imaging/beachball.py:274 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/taup/tau.py:975 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest <doctest obspy.core.event.resourceid.ResourceIdentifier[37]>:1 ObsPyDeprecationWarning Converts the current ID to a valid QuakeML URI. This method is deprecated, use :meth:`get_quakeml_id` instead. Only an invalid QuakeML ResourceIdentifier string it will be converted to a valid one. Otherwise nothing will happen but after calling this method the user can be sure that the ID is a valid QuakeML URI. The resulting ID will be of the form smi:authority_id/prefix/resource_id :type authority_id: str, optional :param authority_id: The base url of the resulting string. Defaults to ``"local"``.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/imaging/source.py:196 UserWarning Tight layout not applied. The left and right margins cannot be made large enough to accommodate all axes decorations.
runtest <doctest obspy.signal._sosfilt._sosfilt[13]>:1 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 4990135184 and id of smi:local/1b21a2d1-834c-4b57-ab78-8aa3d40199db no longer exists, trying to find an object with the same id
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/invsim.py:375 DeprecationWarning Please use `zpk2tf` from the `scipy.signal` namespace, the `scipy.signal.ltisys` namespace is deprecated.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/taup/tau.py:513 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/spectral_estimation.py:1544 UserWarning 4/4 segments omitted in file '/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/obspy-fae0j5bf.npz' (time ranges already covered).
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 52.49999950000001 results in singular transformations; automatically expanding.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/spectral_estimation.py:2045 UserWarning Attempted to set non-positive right xlim on a log-scaled axis. Invalid limit will be ignored.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/imaging/scripts/scan.py:437 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/spectral_estimation.py:2108 MatplotlibDeprecationWarning Auto-removal of grids by pcolor() and pcolormesh() is deprecated since 3.5 and will be removed two minor releases later; please call grid(False) first.
runtest /Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/multiprocessing/resource_tracker.py:104 UserWarning resource_tracker: process died unexpectedly, relaunching. Some resources might leak.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 10.4999995 results in singular transformations; automatically expanding.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 4990128560 and id of obspy.org/tests/test_resource_doc_example no longer exists, trying to find an object with the same id
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/io/nordic/utils.py:184 UserWarning Lines of type I have not been implemented yet, please submit a development request
collect /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/invsim.py:375 DeprecationWarning Please use `zpk2tf` from the `scipy.signal` namespace, the `scipy.signal.ltisys` namespace is deprecated.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/taup/tau.py:1084 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 4990137488 and id of obspy.org/tests/test_resource_doc_example no longer exists, trying to find an object with the same id
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/imaging/beachball.py:245 RuntimeWarning More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/taup/tau.py:244 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/core/event/resourceid.py:622 UserWarning overwritting the id attribute of a ResourceIdentifierobject is very dangerous and will raise an exception in a future version of obspy
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/numpy/matrixlib/defmatrix.py:69 PendingDeprecationWarning the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/io/seiscomp/inventory.py:514 UserWarning Something went hopelessly wrong, found sampling-rate of 0!
collect /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/imaging/maps.py:34 UserWarning Cartopy not installed, map plots will not work.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/cross_correlation.py:985 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/tmp8sxyyav6/lib/python3.10/site-packages/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 9.223855751103727 results in singular transformations; automatically expanding.