#124934 Report by node localhost covering 2018 tests from 63 modules resulted into 4 errors

Report

ObsPy version
1.3.0
GitHub Pull Request
-
Report file
JSON document
Total runtime
360.0 sec
Report date/time
May 30, 2022, 8:50 a.m.

System / Python

Architecture
64bit
Machine
x86_64
Node
localhost
Processor
x86_64
Python Compiler
GCC 7.5.0
Python Implementation
CPython
Python Version
3.7.13
Release
3.10.0-1160.el7.x86_64
System
Linux
Version
#1 SMP Mon Oct 19 16:18:59 UTC 2020

Dependencies

cartopy
---
decorator
5.1.1
flake8
---
geographiclib
---
lxml
4.8.0
matplotlib
3.2.2
numpy
1.21.5
obspy
1.3.0
pyproj
---
pytest
7.1.2
pytest-json-report
1.5.0
requests
2.27.1
scipy
1.7.3
setuptools
61.2.0
shapefile
---
sqlalchemy
1.4.36

Modules (63)

Module Errors / Failures Tracebacks
obspy.clients Not tested -
obspy.clients.arclink Not tested -
obspy.clients.earthworm Not tested -
obspy.clients.fdsn - -
obspy.clients.filesystem - -
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl Not tested -
obspy.clients.seedlink Not tested -
obspy.clients.seishub Not tested -
obspy.clients.syngine Not tested -
obspy.core - -
obspy.core.event - -
obspy.core.inventory - -
obspy.core.util - -
obspy.db Not tested -
obspy.geodetics - -
obspy.imaging - -
obspy.io.ah - -
obspy.io.alsep 4 1 2 3 4
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf - -
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc - -
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal - -
obspy.taup - -
Summary 4 4

Tracebacks (4)

024
025 Reading
026 -------
027
028 There are three types of ALSEP tape: PSE, WTN, and WTH. They are handled by
029 using ObsPy's standard:func:`~obspy.core.stream.read` function. The format is
030 detected automatically.
031
032 >>> from obspy import read
033 >>> st = read("http://darts.isas.jaxa.jp/pub/apollo/pse/p15s/pse.a15.1.2")
UNEXPECTED EXCEPTION: TypeError('Unknown format for file /tmp/obspy-37wd_s5g.2')
Traceback (most recent call last):
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.io.alsep[1]>", line 1, in <module>
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/decorator.py", line 291, in _map_example_filename
return func(*args, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/base.py", line 644, in _generic_reader
generic = callback_func(fh.name, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/decorator.py", line 202, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/stream.py", line 250, in _read
headonly=headonly, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/base.py", line 402, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /tmp/obspy-37wd_s5g.2
/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/io/alsep/__init__.py:33: UnexpectedException
113 91,92,93,94,95,97,98,102,103,104,106,107,108,109, and 111.
114 :type ignore_error: bool, optional
115 :param ignore_error: Include error frames as much as possible if True.
116 :rtype: :class:`~obspy.core.stream.Stream`
117 :return: A ObsPy Stream object.
118
119 .. rubric:: Example
120
121 >>> from obspy import read
122 >>> st = read("/path/to/pse.a15.1.2.mini")
UNEXPECTED EXCEPTION: FileNotFoundError(2, 'No such file or directory')
Traceback (most recent call last):
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.io.alsep.core._read_pse[1]>", line 1, in <module>
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/decorator.py", line 291, in _map_example_filename
return func(*args, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/base.py", line 655, in _generic_reader
raise IOError(2, "No such file or directory", pathname)
FileNotFoundError: [Errno 2] No such file or directory: '/path/to/pse.a15.1.2.mini'
/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/io/alsep/core.py:122: UnexpectedException
276 for scanning available data in huge (temporary) data sets.
277 :type ignore_error: bool, optional
278 :param ignore_error: Include error frames as much as possible if True.
279 :rtype: :class:`~obspy.core.stream.Stream`
280 :return: A ObsPy Stream object.
281
282 .. rubric:: Example
283
284 >>> from obspy import read
285 >>> st = read("/path/to/wth.1.5.mini")
UNEXPECTED EXCEPTION: FileNotFoundError(2, 'No such file or directory')
Traceback (most recent call last):
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.io.alsep.core._read_wth[1]>", line 1, in <module>
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/decorator.py", line 291, in _map_example_filename
return func(*args, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/base.py", line 655, in _generic_reader
raise IOError(2, "No such file or directory", pathname)
FileNotFoundError: [Errno 2] No such file or directory: '/path/to/wth.1.5.mini'
/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/io/alsep/core.py:285: UnexpectedException
186 for scanning available data in huge (temporary) data sets.
187 :type ignore_error: bool, optional
188 :param ignore_error: Include error frames as much as possible if True.
189 :rtype: :class:`~obspy.core.stream.Stream`
190 :return: A ObsPy Stream object.
191
192 .. rubric:: Example
193
194 >>> from obspy import read
195 >>> st = read("/path/to/wtn.1.2.mini")
UNEXPECTED EXCEPTION: FileNotFoundError(2, 'No such file or directory')
Traceback (most recent call last):
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/doctest.py", line 1337, in __run
compileflags, 1), test.globs)
File "<doctest obspy.io.alsep.core._read_wtn[1]>", line 1, in <module>
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/decorator.py", line 291, in _map_example_filename
return func(*args, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/core/util/base.py", line 655, in _generic_reader
raise IOError(2, "No such file or directory", pathname)
FileNotFoundError: [Errno 2] No such file or directory: '/path/to/wtn.1.2.mini'
/home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/io/alsep/core.py:195: UnexpectedException

Skipped tests (43)

Submodule Test Skip message
core core/stream.py::obspy.core.stream._is_pickle Skipped: all tests skipped by +SKIP option
core core/tests/test_code_formatting.py::CodeFormattingTestCase::test_flake8 Skipped: No code formatting tests for release builds
core core/tests/test_code_formatting.py::CodeFormattingTestCase::test_use_obspy_deprecation_warning Skipped: No code formatting tests for release builds
core core/tests/test_code_formatting.py::MatplotlibBackendUsageTestCase::test_no_pyplot_import_in_any_file Skipped: No code formatting tests for release builds
core core/tests/test_event.py::TestEvent::test_plot_farfield_without_quiver_with_maps Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_global Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_ortho Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_location_plot_local Skipped: cartopy not installed
core core/tests/test_inventory.py::TestInventoryCartopy::test_combined_station_event_plot Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_global Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_ortho Skipped: cartopy not installed
core core/tests/test_network.py::TestNetworkCartopy::test_location_plot_local Skipped: cartopy not installed
core.util core/util/misc.py::obspy.core.util.misc.CatchOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.SuppressOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.TemporaryWorkingDirectory Skipped: all tests skipped by +SKIP option
geodetics geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_gps_2_dist_azimuth_with_geographiclib Skipped: Module geographiclib is not installed
geodetics geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_issue_375 Skipped: Module geographiclib is not installed
imaging imaging/tests/test_mopad_script.py::TestMopad::test_script_plot Skipped: Currently broken until further review.
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_slist Skipped: all tests skipped by +SKIP option
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_tspair Skipped: all tests skipped by +SKIP option
io.nlloc io/nlloc/tests/test_util.py::NLLOCTestCase::test_read_nlloc_scatter_coordinate_conversion Skipped: pyproj not installed
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._evmagtonor Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._nortoevmag Skipped: all tests skipped by +SKIP option
io.pde io/pde/mchedr.py::obspy.io.pde.mchedr._is_mchedr Skipped: all tests skipped by +SKIP option
io.quakeml io/quakeml/core.py::obspy.io.quakeml.core._is_quakeml Skipped: all tests skipped by +SKIP option
io.seisan io/seisan/core.py::obspy.io.seisan.core._is_seisan Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_asc Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_q Skipped: all tests skipped by +SKIP option
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_with_extra_field Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_with_extra_field Skipped: pyshp not installed
io.wav io/wav/core.py::obspy.io.wav.core._is_wav Skipped: all tests skipped by +SKIP option
io.y io/y/core.py::obspy.io.y.core._is_y Skipped: all tests skipped by +SKIP option
signal signal/quality_control.py::obspy.signal.quality_control.MSEEDMetadata Skipped: all tests skipped by +SKIP option
taup taup/tests/test_ray_paths.py::TestRayPathCalculations::test_compute_ray_paths Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_tau.py::TestTauPyModel::test_p_iasp91_geo_manual Skipped: Module geographiclib is not installed
taup taup/tests/test_tau.py::TestTauPyModel::test_pierce_p_iasp91_geo Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_tau.py::TestTauPyModel::test_single_path_geo_iasp91 Skipped: test needs geographiclib >= 1.34
taup taup/tests/test_taup_geo.py::TestTaupGeo::test_path_geo Skipped: Module geographiclib is not installed or too old.
taup taup/tests/test_taup_geo.py::TestTaupGeo::test_path_resampling Skipped: Module geographiclib is not installed or too old.

Slowest tests (20)

Runtime Test
10.254s core/stream.py::obspy.core.stream.read
6.641s core/tests/test_stream.py::TestStream::test_read_url_via_network
5.554s taup/__init__.py::obspy.taup
4.823s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_shoot_existing_ray_param
4.422s signal/tests/test_calibration.py::CalibrationTestCase::test_relcal_different_overlaps
4.192s io/xseed/tests/test_core.py::CoreTestCase::test_response_calculation_from_seed_and_xseed
3.597s signal/tf_misfit.py::obspy.signal.tf_misfit.plot_tfr
2.530s taup/tau.py::obspy.taup.tau.plot_travel_times
2.394s taup/tests/test_tau.py::TestTauPyModel::test_regional_models
2.272s taup/tests/test_tau.py::TestTauPyModel::test_vs_java_iasp91
2.066s signal/tests/test_invsim.py::InvSimTestCase::test_evalresp_file_like_object
1.976s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_many_identically_named_phases
1.942s signal/tests/test_polarization.py::PolarizationTestCase::test_polarization_vidale
1.784s signal/tests/test_cross_correlation.py::TestCrossCorrelation::test_correlate_stream_template_and_correlation_detector
1.458s signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_restricted_stacks
1.352s signal/tests/test_calibration.py::CalibrationTestCase::test_relcal_using_dict
1.349s signal/tests/test_calibration.py::CalibrationTestCase::test_relcal_using_traces
1.287s core/tests/test_trace.py::TestTrace::test_remove_response_plot
1.207s signal/tests/test_rotate.py::RotateTestCase::test_rotate2zne_against_lqt_different_combinations
1.192s taup/tests/test_taup_plotting.py::TestTauPyPlotting::test_spherical_many_phases

Warnings (2)

Stage Filename Category Message
runtest /home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/matplotlib/projections/polar.py:729 DeprecationWarning `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
collect /home/kpoi/.conda/envs/kpy/lib/python3.7/site-packages/obspy/clients/arclink/__init__.py:31 ObsPyDeprecationWarning ArcLink protocol has been officially deprecated and some main servers have been shut down already. Please consider using other methods like FDSN web services to fetch data. ArcLink functionality is now untested in ObsPy.