#126124 Report by node gh-actions covering 1989 tests from 61 modules resulted into 1 error

Report

ObsPy version
0.0.0.dev+0.gbb139dcc2f
GitHub Pull Request
https://github.com/obspy/obspy/pull/27
Report file
JSON document
Total runtime
330.7 sec
Report date/time
July 11, 2022, 1:28 p.m.

System / Python

Architecture
64bit
Machine
x86_64
Node
gh-actions
Processor
i386
Python Compiler
Clang 13.0.1
Python Implementation
CPython
Python Version
3.9.13
Release
20.6.0
System
Darwin
Version
Darwin Kernel Version 20.6.0: Tue Apr 19 21:04:45 PDT 2022; root:xnu-7195.141.29~1/RELEASE_X86_64

Dependencies

cartopy
---
decorator
5.1.1
flake8
---
geographiclib
---
lxml
4.9.1
matplotlib
3.5.2
numpy
1.23.1
obspy
0.0.0.dev+0.gbb139dcc2f
pyproj
3.3.1
requests
2.28.1
scipy
1.8.1
setuptools
63.1.0
shapefile
---
sqlalchemy
1.4.39

Modules (61)

Module Errors / Failures Tracebacks
obspy.clients.arclink Not tested -
obspy.clients.earthworm Not tested -
obspy.clients.fdsn - -
obspy.clients.filesystem - -
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl Not tested -
obspy.clients.seedlink Not tested -
obspy.clients.seishub Not tested -
obspy.clients.syngine Not tested -
obspy.core - -
obspy.core.event - -
obspy.core.inventory - -
obspy.core.util - -
obspy.db Not tested -
obspy.geodetics - -
obspy.imaging - -
obspy.io.ah - -
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf - -
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc - -
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal 1 1
obspy.taup - -
Summary 1 1

Tracebacks (1)

1 signal 

Traceback (most recent call last):
File "/Users/runner/work/obspy/obspy/obspy/signal/tests/test_spectral_estimation.py", line 703, in test_issue1216
assert len(w) == 2
AssertionError: assert 4 == 2
+ where 4 = len([<warnings.WarningMessage object at 0x142df3a30>, <warnings.WarningMessage object at 0x142df3eb0>, <warnings.WarningMessage object at 0x142cab490>, <warnings.WarningMessage object at 0x142cabf40>])

Skipped tests (45)

Submodule Test Skip message
core obspy/core/stream.py::obspy.core.stream._is_pickle Skipped: all tests skipped by +SKIP option
core obspy/core/tests/test_event.py::TestEvent::test_plot_farfield_without_quiver_with_maps Skipped: basemap not installed
core obspy/core/tests/test_event.py::TestBasemap::test_catalog_plot_global Skipped: basemap not installed
core obspy/core/tests/test_event.py::TestBasemap::test_catalog_plot_ortho Skipped: basemap not installed
core obspy/core/tests/test_event.py::TestBasemap::test_catalog_plot_ortho_longitude_wrap Skipped: basemap not installed
core obspy/core/tests/test_event.py::TestBasemap::test_catalog_plot_local Skipped: basemap not installed
core obspy/core/tests/test_event.py::TestBasemap::test_plot_catalog_before_1900 Skipped: basemap not installed
core obspy/core/tests/test_network.py::TestNetworkBasemap::test_location_plot_global Skipped: no or invalid basemap installation
core obspy/core/tests/test_network.py::TestNetworkBasemap::test_location_plot_ortho Skipped: no or invalid basemap installation
core obspy/core/tests/test_network.py::TestNetworkBasemap::test_location_plot_local Skipped: no or invalid basemap installation
core obspy/core/tests/test_network.py::TestNetworkCartopy::test_location_plot_global Skipped: cartopy not installed
core obspy/core/tests/test_network.py::TestNetworkCartopy::test_location_plot_ortho Skipped: cartopy not installed
core obspy/core/tests/test_network.py::TestNetworkCartopy::test_location_plot_local Skipped: cartopy not installed
core.util obspy/core/util/misc.py::obspy.core.util.misc.CatchOutput Skipped: all tests skipped by +SKIP option
core.util obspy/core/util/misc.py::obspy.core.util.misc.SuppressOutput Skipped: all tests skipped by +SKIP option
core.util obspy/core/util/misc.py::obspy.core.util.misc.TemporaryWorkingDirectory Skipped: all tests skipped by +SKIP option
geodetics obspy/geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_gps_2_dist_azimuth_with_geographiclib Skipped: Module geographiclib is not installed
geodetics obspy/geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_issue_375 Skipped: Module geographiclib is not installed
imaging obspy/imaging/tests/test_mopad_script.py::TestMopad::test_script_plot Skipped: Currently broken until further review.
io.ascii obspy/io/ascii/core.py::obspy.io.ascii.core._is_slist Skipped: all tests skipped by +SKIP option
io.ascii obspy/io/ascii/core.py::obspy.io.ascii.core._is_tspair Skipped: all tests skipped by +SKIP option
io.nordic obspy/io/nordic/utils.py::obspy.io.nordic.utils._evmagtonor Skipped: all tests skipped by +SKIP option
io.nordic obspy/io/nordic/utils.py::obspy.io.nordic.utils._nortoevmag Skipped: all tests skipped by +SKIP option
io.pde obspy/io/pde/mchedr.py::obspy.io.pde.mchedr._is_mchedr Skipped: all tests skipped by +SKIP option
io.quakeml obspy/io/quakeml/core.py::obspy.io.quakeml.core._is_quakeml Skipped: all tests skipped by +SKIP option
io.seisan obspy/io/seisan/core.py::obspy.io.seisan.core._is_seisan Skipped: all tests skipped by +SKIP option
io.sh obspy/io/sh/core.py::obspy.io.sh.core._is_asc Skipped: all tests skipped by +SKIP option
io.sh obspy/io/sh/core.py::obspy.io.sh.core._is_q Skipped: all tests skipped by +SKIP option
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_catalog_shapefile_with_extra_field Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_via_plugin Skipped: pyshp not installed
io.shapefile obspy/io/shapefile/tests/test_core.py::ShapefileTestCase::test_write_inventory_shapefile_with_extra_field Skipped: pyshp not installed
io.wav obspy/io/wav/core.py::obspy.io.wav.core._is_wav Skipped: all tests skipped by +SKIP option
io.y obspy/io/y/core.py::obspy.io.y.core._is_y Skipped: all tests skipped by +SKIP option
signal obspy/signal/quality_control.py::obspy.signal.quality_control.MSEEDMetadata Skipped: all tests skipped by +SKIP option
signal obspy/signal/tests/test_quality_control.py::QualityControlTestCase::test_schema_validation Skipped: Test requires the jsonschema module
signal obspy/signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_spectrogram_plot Skipped: matplotlib >= 3 shifts labels
taup obspy/taup/tests/test_ray_paths.py::TestRayPathCalculations::test_compute_ray_paths Skipped: test needs geographiclib >= 1.34
taup obspy/taup/tests/test_tau.py::TestTauPyModel::test_p_iasp91_geo_manual Skipped: Module geographiclib is not installed
taup obspy/taup/tests/test_tau.py::TestTauPyModel::test_pierce_p_iasp91_geo Skipped: test needs geographiclib >= 1.34
taup obspy/taup/tests/test_tau.py::TestTauPyModel::test_single_path_geo_iasp91 Skipped: test needs geographiclib >= 1.34
taup obspy/taup/tests/test_taup_geo.py::TestTaupGeo::test_path_geo Skipped: Module geographiclib is not installed or too old.
taup obspy/taup/tests/test_taup_geo.py::TestTaupGeo::test_path_resampling Skipped: Module geographiclib is not installed or too old.

Slowest tests (20)

Runtime Test
15.461s obspy/io/xseed/tests/test_core.py::CoreTestCase::test_response_calculation_from_seed_and_xseed
13.772s obspy/taup/__init__.py::obspy.taup
10.977s obspy/taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_shoot_existing_ray_param
6.362s obspy/taup/tau.py::obspy.taup.tau.plot_travel_times
5.853s obspy/taup/tests/test_tau.py::TestTauPyModel::test_regional_models
5.474s obspy/taup/tests/test_tau.py::TestTauPyModel::test_vs_java_iasp91
4.815s obspy/signal/tests/test_calibration.py::CalibrationTestCase::test_relcal_different_overlaps
4.073s obspy/taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_many_identically_named_phases
3.882s obspy/io/arclink/tests/test_inventory_xml.py::ArclinkInventoryTestCase::test_auto_read_arclink_xml
3.612s obspy/signal/tests/test_cross_correlation.py::TestCrossCorrelation::test_correlate_stream_template_and_correlation_detector
3.586s obspy/io/mseed/tests/test_mseed_special_issues.py::MSEEDSpecialIssueTestCase::test_infinite_loop
3.539s obspy/signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_restricted_stacks
3.364s obspy/signal/tests/test_rotate.py::RotateTestCase::test_rotate2zne_against_lqt_different_combinations
3.029s obspy/signal/tests/test_polarization.py::PolarizationTestCase::test_polarization_vidale
2.940s obspy/core/tests/test_trace.py::TestTrace::test_remove_response_plot
2.892s obspy/taup/tests/test_velocity_model.py::TestTauPyVelocityModel::test_read_velocity_model
2.441s obspy/taup/tests/test_tau.py::TestTauPyModel::test_surface_wave_ttimes
2.367s obspy/core/stream.py::obspy.core.stream.read
2.276s obspy/taup/tau.py::obspy.taup.tau.TauPyModel.__init__
2.263s obspy/signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_w_iris_against_obspy_results

Warnings (32)

Stage Filename Category Message
runtest /Users/runner/work/obspy/obspy/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 5372717664 and id of obspy.org/tests/test_resource_doc_example no longer exists, trying to find an object with the same id
runtest /Users/runner/work/obspy/obspy/obspy/signal/invsim.py:375 DeprecationWarning Please use `zpk2tf` from the `scipy.signal` namespace, the `scipy.signal.ltisys` namespace is deprecated.
runtest /Users/runner/work/obspy/obspy/obspy/taup/tau.py:244 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /Users/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 52.49999950000001 results in singular transformations; automatically expanding.
runtest /Users/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2108 MatplotlibDeprecationWarning Auto-removal of grids by pcolor() and pcolormesh() is deprecated since 3.5 and will be removed two minor releases later; please call grid(False) first.
runtest /Users/runner/work/obspy/obspy/obspy/taup/tau.py:975 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /Users/runner/work/obspy/obspy/obspy/io/nordic/utils.py:184 UserWarning Lines of type I have not been implemented yet, please submit a development request
runtest /Users/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2045 UserWarning Attempted to set non-positive right xlim on a log-scaled axis. Invalid limit will be ignored.
runtest /Users/runner/work/obspy/obspy/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 5378080480 and id of smi:local/d4d5160e-6836-4e88-9f4e-9ae34dd1eaf5 no longer exists, trying to find an object with the same id
runtest /Users/runner/work/obspy/obspy/obspy/imaging/source.py:197 UserWarning Tight layout not applied. The left and right margins cannot be made large enough to accommodate all axes decorations.
runtest /Users/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 10.4999995 results in singular transformations; automatically expanding.
runtest /Users/runner/work/obspy/obspy/obspy/io/seiscomp/inventory.py:496 UserWarning Clock drift division by sample rate of 0: using sec/sample
runtest /Users/runner/work/obspy/obspy/obspy/core/event/resourceid.py:622 UserWarning overwritting the id attribute of a ResourceIdentifierobject is very dangerous and will raise an exception in a future version of obspy
runtest /Users/runner/work/obspy/obspy/obspy/core/event/resourceid.py:348 UserWarning The object with identity of: 5372717952 and id of obspy.org/tests/test_resource_doc_example no longer exists, trying to find an object with the same id
collect /Users/runner/work/obspy/obspy/obspy/imaging/maps.py:35 UserWarning Cartopy not installed, map plots will not work.
runtest /Users/runner/work/obspy/obspy/obspy/taup/tau.py:513 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /Users/runner/work/obspy/obspy/obspy/taup/tau_branch.py:489 UserWarning Resizing a TauP array inplace failed due to the existence of other references to the array, creating a new array. See Obspy #2280.
runtest /Users/runner/work/obspy/obspy/obspy/imaging/beachball.py:246 RuntimeWarning More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
runtest /Users/runner/work/obspy/obspy/obspy/taup/tau.py:340 RuntimeWarning More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).
runtest <doctest obspy.signal._sosfilt._sosfilt[13]>:1 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /Users/runner/work/obspy/obspy/obspy/signal/cross_correlation.py:985 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /Users/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:2045 UserWarning Attempting to set identical left == right == 9.223855751103727 results in singular transformations; automatically expanding.
runtest /Users/runner/work/obspy/obspy/obspy/signal/spectral_estimation.py:1544 UserWarning 4/4 segments omitted in file '/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/obspy-22r8whtg.npz' (time ranges already covered).
runtest /Users/runner/work/obspy/obspy/obspy/imaging/scripts/scan.py:437 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /Users/runner/work/obspy/obspy/obspy/core/utcdatetime.py:1084 ObsPyDeprecationWarning Comparing UTCDateTime objects of different precision is not defined will raise an Exception in a future version of obspy
runtest /Users/runner/work/obspy/obspy/obspy/imaging/beachball.py:275 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
runtest /Users/runner/miniconda3/envs/test3.9/lib/python3.9/site-packages/numpy/matrixlib/defmatrix.py:69 PendingDeprecationWarning the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
runtest /Users/runner/work/obspy/obspy/obspy/taup/tau.py:1084 UserWarning Matplotlib is currently using agg, which is a non-GUI backend, so cannot show the figure.
collect /Users/runner/work/obspy/obspy/obspy/clients/arclink/__init__.py:34 ObsPyDeprecationWarning ArcLink protocol has been officially deprecated and some main servers have been shut down already. Please consider using other methods like FDSN web services to fetch data. ArcLink functionality is now untested in ObsPy.
runtest /Users/runner/work/obspy/obspy/obspy/io/seiscomp/inventory.py:514 UserWarning Something went hopelessly wrong, found sampling-rate of 0!
runtest <doctest obspy.core.event.resourceid.ResourceIdentifier[37]>:1 ObsPyDeprecationWarning Converts the current ID to a valid QuakeML URI. This method is deprecated, use :meth:`get_quakeml_id` instead. Only an invalid QuakeML ResourceIdentifier string it will be converted to a valid one. Otherwise nothing will happen but after calling this method the user can be sure that the ID is a valid QuakeML URI. The resulting ID will be of the form smi:authority_id/prefix/resource_id :type authority_id: str, optional :param authority_id: The base url of the resulting string. Defaults to ``"local"``.
collect /Users/runner/work/obspy/obspy/obspy/signal/invsim.py:375 DeprecationWarning Please use `zpk2tf` from the `scipy.signal` namespace, the `scipy.signal.ltisys` namespace is deprecated.