#138709 Report by node mother covering 2132 tests from 61 modules resulted into 18 errors

Report

ObsPy version
1.4.1.post0+174.gf390a3e942
GitHub Pull Request
-
Report file
JSON document
Total runtime
148.2 sec
Report date/time
May 14, 2024, 5:48 a.m.

System / Python

Architecture
64bit
Machine
x86_64
Node
mother
Processor
Python Compiler
GCC 10.3.0
Python Implementation
CPython
Python Version
3.10.5
Release
5.10.0-25-amd64
System
Linux
Version
#1 SMP Debian 5.10.191-1 (2023-08-16)

Dependencies

cartopy
0.20.3
decorator
5.1.1
flake8
5.0.4
geographiclib
2.0
lxml
4.9.1
matplotlib
3.5.3
numpy
1.23.2
obspy
1.4.1.post0+174.gf390a3e942
pyproj
3.3.1
pytest
7.1.2
pytest-json-report
1.5.0
requests
2.28.1
scipy
1.9.0
setuptools
65.0.2
shapefile
---
sqlalchemy
1.4.40

Modules (61)

Module Errors / Failures Tracebacks
obspy.clients.earthworm Not tested -
obspy.clients.fdsn - -
obspy.clients.filesystem - -
obspy.clients.iris Not tested -
obspy.clients.neic Not tested -
obspy.clients.nrl - -
obspy.clients.seedlink - -
obspy.clients.syngine Not tested -
obspy.core 3 1 2 3
obspy.core.event - -
obspy.core.inventory - -
obspy.core.util - -
obspy.geodetics - -
obspy.imaging - -
obspy.io.ah - -
obspy.io.alsep - -
obspy.io.arclink - -
obspy.io.ascii - -
obspy.io.cmtsolution - -
obspy.io.cnv - -
obspy.io.css - -
obspy.io.csv - -
obspy.io.cybershake 2 4 5
obspy.io.dmx - -
obspy.io.focmec - -
obspy.io.gcf 13 6 7 8 9 10 11 12 13 14 15 16 17 18
obspy.io.gse2 - -
obspy.io.hypodd - -
obspy.io.iaspei - -
obspy.io.json - -
obspy.io.kinemetrics - -
obspy.io.kml - -
obspy.io.mseed - -
obspy.io.ndk - -
obspy.io.nied - -
obspy.io.nlloc - -
obspy.io.nordic - -
obspy.io.pdas - -
obspy.io.pde - -
obspy.io.quakeml - -
obspy.io.reftek - -
obspy.io.rg16 - -
obspy.io.sac - -
obspy.io.scardec - -
obspy.io.seg2 - -
obspy.io.segy - -
obspy.io.seisan - -
obspy.io.seiscomp - -
obspy.io.sh - -
obspy.io.shapefile - -
obspy.io.stationtxt - -
obspy.io.stationxml - -
obspy.io.wav - -
obspy.io.win - -
obspy.io.xseed - -
obspy.io.y - -
obspy.io.zmap - -
obspy.realtime - -
obspy.scripts - -
obspy.signal - -
obspy.taup - -
Summary 18 18

Tracebacks (18)

Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/core/tests/test_waveform_plugins.py", line 104, in test_read_and_write
st = read(outfile)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /tmp/obspy-z_l9j32k.tmp
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/core/tests/test_waveform_plugins.py", line 379, in test_issue_193
tr_test = read(tempfile, format)[0]
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 426, in _read_from_plugin
list_obj = read_format(filename, **kwargs)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf
ret = _fill_gcf_from_file(file, obj, mode)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file
gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg),
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__
func = self.__getitem__(name)
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/core/tests/test_waveform_plugins.py", line 474, in test_deepcopy
st = read(tmpfile, format=format)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 426, in _read_from_plugin
list_obj = read_format(filename, **kwargs)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf
ret = _fill_gcf_from_file(file, obj, mode)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file
gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg),
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__
func = self.__getitem__(name)
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read
014
015 Reading
016 -------
017
018 Reading CyberShake waveform data is handled by using
019 ObsPy's standard :func:`~obspy.core.stream.read` function. The format is
020 detected automatically.
021
022 >>> from obspy import read
023 >>> st = read("/path/to/test.grm")
UNEXPECTED EXCEPTION: TypeError('Unknown format for file /home/megies/git/obspy/obspy/io/cybershake/tests/data/test.grm')
Traceback (most recent call last):
File "/home/megies/miniconda3/envs/master/lib/python3.10/doctest.py", line 1350, in __run
exec(compile(example.source, filename, "single",
File "<doctest obspy.io.cybershake[1]>", line 1, in <module>
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/cybershake/tests/data/test.grm
/home/megies/git/obspy/obspy/io/cybershake/__init__.py:23: UnexpectedException
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/cybershake/tests/test_core.py", line 37, in test_read_cybershake
st2 = read(valid_file)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/cybershake/tests/data/test.grm
015 (https://www.gnu.org/copyleft/lesser.html)
016
017 Reading
018 -------
019
020 Similar to reading any other waveform data format using :mod:`obspy.core`
021 The format will be determined automatically.
022
023 >>> from obspy import read
024 >>> st = read("/path/to/20160603_1955n.gcf")
UNEXPECTED EXCEPTION: TypeError('Unknown format for file /home/megies/git/obspy/obspy/io/gcf/tests/data/20160603_1955n.gcf')
Traceback (most recent call last):
File "/home/megies/miniconda3/envs/master/lib/python3.10/doctest.py", line 1350, in __run
exec(compile(example.source, filename, "single",
File "<doctest obspy.io.gcf[1]>", line 1, in <module>
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/gcf/tests/data/20160603_1955n.gcf
/home/megies/git/obspy/obspy/io/gcf/__init__.py:24: UnexpectedException
391 10 failure to decode data values (last data != RIC, may be
392 due to bad RIC!!!)
393 11 first first difference != 0 (may not be critical!!!)
394 21 status codes 10 + 11
395 ==== ==========================================================
396
397 .. rubric:: Example
398
399 >>> from obspy import read
400 >>> st = read("/path/to/20160603_1955n.gcf", format="GCF")
UNEXPECTED EXCEPTION: AttributeError('/home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read')
Traceback (most recent call last):
File "/home/megies/miniconda3/envs/master/lib/python3.10/doctest.py", line 1350, in __run
exec(compile(example.source, filename, "single",
File "<doctest obspy.io.gcf.core._read_gcf[1]>", line 1, in <module>
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 426, in _read_from_plugin
list_obj = read_format(filename, **kwargs)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf
ret = _fill_gcf_from_file(file, obj, mode)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file
gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg),
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__
func = self.__getitem__(name)
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read
/home/megies/git/obspy/obspy/io/gcf/core.py:400: UnexpectedException
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 32, in test_read_via_obspy
st = read(filename)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/gcf/tests/data/20160603_1955n.gcf
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 51, in test_read_head_via_obspy
st = read(filename, headonly=True)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/gcf/tests/data/20160603_1955n.gcf
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 68, in test_read_via_module
st = _read_gcf(filename)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf
ret = _fill_gcf_from_file(file, obj, mode)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file
gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg),
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__
func = self.__getitem__(name)
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 87, in test_read_head_via_module
st = _read_gcf(filename, headonly=True)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf
ret = _fill_gcf_from_file(file, obj, mode)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file
gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg),
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__
func = self.__getitem__(name)
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 104, in test_read_channel_prefix_via_obspy
st = read(filename, headonly=True, channel_prefix="HN")
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/gcf/tests/data/20160603_1955n.gcf
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 121, in test_merge_gcf_stream
st1 = read(filename, headonly=True, channel_prefix="HN")
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/gcf/tests/data/20160603_1955n.gcf
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 146, in test_sps_d
st = read(filename, headonly=True, channel_prefix="HN")
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/gcf/tests/data/20160603_1910n.gcf
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 163, in test_read_no_merge
st = read(filename, blockmerge=False, channel_prefix="HN")
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename
return func(*args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read
st = _generic_reader(pathname_or_url, _read, **kwargs)
File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader
generic = callback_func(pathnames[0], **kwargs)
File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun
return caller(func, *(extras + args), **kw)
File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file
result = func(filename, *args, **kwargs)
File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read
stream, format = _read_from_plugin('waveform', filename, format=format,
File "/home/megies/git/obspy/obspy/core/util/base.py", line 406, in _read_from_plugin
raise TypeError('Unknown format for file %s' % filename)
TypeError: Unknown format for file /home/megies/git/obspy/obspy/io/gcf/tests/data/20160603_1910n.gcf
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 229, in test_write_read_fractional_start
in_stream = _read_gcf(filename, network='XY',
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf
ret = _fill_gcf_from_file(file, obj, mode)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file
gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg),
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__
func = self.__getitem__(name)
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 299, in test_write_read
in_stream = _read_gcf(filename, network='XY',
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf
ret = _fill_gcf_from_file(file, obj, mode)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file
gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg),
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__
func = self.__getitem__(name)
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read
Traceback (most recent call last):
File "/home/megies/git/obspy/obspy/io/gcf/tests/test_core.py", line 332, in test_split_last_block
st = _read_gcf(filename)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf
ret = _fill_gcf_from_file(file, obj, mode)
File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file
gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg),
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__
func = self.__getitem__(name)
File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__
func = self._FuncPtr((name_or_ordinal, self))
AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read

Skipped tests (20)

Submodule Test Skip message
core core/stream.py::obspy.core.stream._is_pickle Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.CatchOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.SuppressOutput Skipped: all tests skipped by +SKIP option
core.util core/util/misc.py::obspy.core.util.misc.TemporaryWorkingDirectory Skipped: all tests skipped by +SKIP option
geodetics geodetics/tests/test_util_geodetics.py::TestUtilGeodetics::test_gps_2_dist_azimuth_bug150 Skipped: Geographiclib installed, not using calc_vincenty_inverse
imaging imaging/tests/test_mopad_script.py::TestMopad::test_script_plot Skipped: Currently broken until further review.
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_slist Skipped: all tests skipped by +SKIP option
io.ascii io/ascii/core.py::obspy.io.ascii.core._is_tspair Skipped: all tests skipped by +SKIP option
io.gcf io/gcf/core.py::obspy.io.gcf.core._write_gcf Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._evmagtonor Skipped: all tests skipped by +SKIP option
io.nordic io/nordic/utils.py::obspy.io.nordic.utils._nortoevmag Skipped: all tests skipped by +SKIP option
io.pde io/pde/mchedr.py::obspy.io.pde.mchedr._is_mchedr Skipped: all tests skipped by +SKIP option
io.quakeml io/quakeml/core.py::obspy.io.quakeml.core._is_quakeml Skipped: all tests skipped by +SKIP option
io.seisan io/seisan/core.py::obspy.io.seisan.core._is_seisan Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_asc Skipped: all tests skipped by +SKIP option
io.sh io/sh/core.py::obspy.io.sh.core._is_q Skipped: all tests skipped by +SKIP option
io.wav io/wav/core.py::obspy.io.wav.core._is_wav Skipped: all tests skipped by +SKIP option
io.y io/y/core.py::obspy.io.y.core._is_y Skipped: all tests skipped by +SKIP option
signal signal/quality_control.py::obspy.signal.quality_control.MSEEDMetadata Skipped: all tests skipped by +SKIP option
signal signal/tests/test_quality_control.py::TestQualityControl::test_schema_validation Skipped: Test requires the jsonschema module

Slowest tests (20)

Runtime Test
22.418s geodetics/tests/test_util_flinnengdahl.py::TestUtilFlinnEngdahl::test_coordinates
5.585s io/xseed/tests/test_core.py::TestCore::test_response_calculation_from_seed_and_xseed
4.625s core/tests/test_event.py::TestEvent::test_plot_farfield_without_quiver_with_maps
3.259s taup/tests/test_tau.py::TestTauPyModel::test_regional_models
3.005s signal/tests/test_calibration.py::TestCalibration::test_relcal_different_overlaps
2.836s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_shoot_existing_ray_param
2.688s taup/__init__.py::obspy.taup
2.342s signal/tests/test_cross_correlation.py::TestCrossCorrelation::test_correlate_stream_template_and_correlation_detector
1.716s core/tests/test_trace.py::TestTrace::test_trim_floating_point_with_padding_2
1.645s io/csv/__init__.py::obspy.io.csv
1.457s signal/tests/test_polarization.py::TestPolarization::test_polarization_vidale
1.442s signal/tests/test_rotate.py::TestRotate::test_rotate2zne_against_lqt_different_combinations
1.371s taup/tests/test_seismic_phase.py::TestTauPySeismicPhase::test_many_identically_named_phases
1.368s core/tests/test_waveform_plugins.py::TestWaveformPlugins::test_read_thread_safe
1.319s signal/tests/test_interpolation.py::TestInterpolation::test_plot_lanczos_window
1.283s signal/tests/test_spectral_estimation.py::TestPsd::test_ppsd_restricted_stacks
1.243s taup/tests/test_tau.py::TestTauPyModel::test_vs_java_iasp91
1.175s signal/tests/test_invsim.py::TestInvSim::test_evalresp_file_like_object
1.041s imaging/tests/test_ppsd.py::TestPPSD::test_ppsd_plot
0.963s taup/tests/test_ray_paths.py::TestRayPathCalculations::test_compute_ray_paths

Warnings (1)

Stage Filename Category Message
runtest /home/megies/miniconda3/envs/master/lib/python3.10/site-packages/_pytest/threadexception.py:73 PytestUnhandledThreadExceptionWarning Exception in thread Thread-71 (test_functions) Traceback (most recent call last): File "/home/megies/miniconda3/envs/master/lib/python3.10/threading.py", line 1016, in _bootstrap_inner self.run() File "/home/megies/miniconda3/envs/master/lib/python3.10/threading.py", line 953, in run self._target(*self._args, **self._kwargs) File "/home/megies/git/obspy/obspy/core/tests/test_waveform_plugins.py", line 318, in test_functions st = read(outfile, format=format) File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun return caller(func, *(extras + args), **kw) File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 298, in _map_example_filename return func(*args, **kwargs) File "/home/megies/git/obspy/obspy/core/stream.py", line 208, in read st = _generic_reader(pathname_or_url, _read, **kwargs) File "/home/megies/git/obspy/obspy/core/util/base.py", line 651, in _generic_reader generic = callback_func(pathnames[0], **kwargs) File "/home/megies/miniconda3/envs/master/lib/python3.10/site-packages/decorator.py", line 232, in fun return caller(func, *(extras + args), **kw) File "/home/megies/git/obspy/obspy/core/util/decorator.py", line 209, in uncompress_file result = func(filename, *args, **kwargs) File "/home/megies/git/obspy/obspy/core/stream.py", line 253, in _read stream, format = _read_from_plugin('waveform', filename, format=format, File "/home/megies/git/obspy/obspy/core/util/base.py", line 426, in _read_from_plugin list_obj = read_format(filename, **kwargs) File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 457, in _read_gcf ret = _fill_gcf_from_file(file, obj, mode) File "/home/megies/git/obspy/obspy/io/gcf/core.py", line 240, in _fill_gcf_from_file gcf_io.init_GcfSeg_for_read.argtypes = [ctypes.POINTER(_GcfSeg), File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 387, in __getattr__ func = self.__getitem__(name) File "/home/megies/miniconda3/envs/master/lib/python3.10/ctypes/__init__.py", line 392, in __getitem__ func = self._FuncPtr((name_or_ordinal, self)) AttributeError: /home/megies/git/obspy/obspy/lib/gcf.cpython-310-x86_64-linux-gnu.so: undefined symbol: init_GcfSeg_for_read